five

Datasets for the Carpentry-style RNA-seq lesson

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Zenodo2020-08-01 更新2026-05-25 收录
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File descriptions:<br> - <strong>counts.txt</strong>: a dataframe of the sample raw counts. It is a tab separated file therefore data are in tabulated separated columns.<br> - <strong>experimental_design_modified.txt</strong> dataframe indicates the correspondence between samples and experimental conditions (e.g. control, treated). <br> - <strong>differential_genes.tsv</strong> dataframe contains the result of the DESeq2 analysis. The counts.txt file was obtained by running the `v0.1.1` version of a RNA-Seq bioinformatic pipeline on the mRNA-Seq sequencing files from Vogel et al. (2016): https://www.ebi.ac.uk/ena/data/view/PRJEB13938. Please read the original study (Vogel et al. 2016): https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.14036
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2020-05-11
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