Insights into the Catalytic Activity of a Metagenome-Derived Urethanase
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Reduced molecular dynamics (MD) trajectories (5,000 snapshots each, representing 1 μs of simulation) for both amidase and esterase activities of the AlphaFold model of UMG-SP2 are provided, along with the corresponding starting geometries in PDB format. The simulations were performed for the UMG-SP2 complex with the 4-nitrophenyl benzylcarbamate (pNC) substrate, using the MM level of theory, the AMBER force field, and the NAMD software package.
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Zenodo创建时间：
2025-09-28
