Additional file 8 of MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities

Additional file 8: Table S4.Read annotation statistics for kimchi fermentation datasets from MetaPro, HUMAnN3, HUMAnN2, SAMSA2, compared with the gold standard. This table shows the number of reads in each kimchi sample, annotated to the expected 5 lactic acid bacteria (LAB) from each pipeline: Leuconostic mesenteroides, Lactobacillus sakei, Weissella koreensis, Leuconostoc carnosum, and Leuconostoc gelidum. The expected results were obtained by annotating the kimchi datasets against a database containing only the reference gene sequences for the 5 LAB, using BWA.