Simultaneous three-dimensional vascular and tubular imaging of whole mouse kidneys with X-ray µCT

µCT dataset of a mouse kidney injected with contrast agent XlinCA and scanned with 3.3 µm voxel size. Detailed sample preparation and image acquisition protocols are published as "Simultaneous three-dimensional vascular and tubular imaging of whole mouse kidneys with X-ray µCT" in <em>Microscopy and Microanalysis</em>. Segmentations of the vascular and tubular lumina along with the renal tissue are provided as masks. The three different segmented features were combined into a single dataset and encoded as different gray values: 0: Background<br> 51: Tubules<br> 204: Tissue<br> 255: Blood vessels The Supplemental Video features a computer graphics visualization of the segmented masks. Blood vessel lumina are rendered in red, tissue in transparent blue and tubular lumina in yellow.