Fish species occupancy File A2

Just Another Gibbs Sampler (JAGS) code as implemented in R using the package r-jags to fit multi-taxa dynamic occupancy models to detection/non-detection data for the Conasauga and Etowah river study sites. The terms “ntaxa”, “nsite”, and “nyear” refer to the number of taxa, sites, and years, respectively, included in the data set; nrep is the maximum number of replicate, within-year surveys across all sites and years. Code is shown for the basic (no covariates) model, with lines added and marked with “#” to show how random-slopes models were fit for streamflow covariates.