admixtools_snp_file

SNP file in eigenstrat format for Admixtools. Column 1 contains SNP ids, column 2 is the chromosome (set to 1), column 3 gives position in cM, column 4 gives position in BP (set to arbitrary values), column 5 gives the reference allele, and column 6 gives the variant allele. Positions are used for jackknife resampling to generate a Z score, however the position of SNPs along the genome is not known.