Additional file 4 of A systems biology framework integrating GWAS and RNA-seq to shed light on the molecular basis of sperm quality in swine

Additional file 4: Table S2. Details on the SNPs showing significant associations (FDR ≤ 0.05) in the GWAS across autosomal chromosomes and unplaced scaffolds. Chr = chromosome; BP = base pairs (location); Beta = additive effect; MAF = minor allele frequency; FDR = false discovery rate; HABN = head abnormalities; MT_5 = percentage of motile spermatozoa at 5 min; MT_90 = percentage of motile spermatozoa at 90 min; NABN = neck abnormalities; PDROP = proximal droplets; R_ACRO = ratio abnormal acrosomes.