Supplementary data and scripts for Willemsen and Bravo 2019 "Origin and evolution of papillomavirus (onco)genes and genomes"

Supplementary data for Willemsen and Bravo 2019 "Origin and evolution of papillomavirus (onco)genes and genomes". The data set consists of two folders: “Bali-Phy” and “RandomPermutationTests”. The “Bali-Phy” folder contains the final results and convergence diagnostics of the Common Ancestry tests obtained by using the Bali-Phy software. The “RandomPermutationTests” folder contains all the data and scripts to repeat the random permutation tests described in the manuscript. Please see the corresponding README files for more information.