Supplementary data for marine macrogenomics paper

These archived datasets were used to summarize NGS data available for marine species. The work is associated with the following paper: DOI: 10.1098/rspb.2026.0357 The following datasets (gziped TSV files) were downloaded from European Nucleotide Archive (ENA): ena_runs.description.tsv.gz : information about sequencing runs of samples ena_samples.description.tsv.gz : information about sequenced samples in studies/projects ena_study.description.tsv.gz : information about sequencing studies/projects The code to generate data statistics including the TSV files above is available in the external data repository https://github.com/andreaswallberg/macrogenomics and archived here: macrogenomics-main.zipThe file README.md in the archive contains information about how to execute the scripts and what they were used for. Supplementary data tables are available here: Supplementary_data.tar.gzContents (also listed in README.txt): Supplementary_data_1.ena_table.samples.species.contemporary.tsv : information about contemporary/modern individual samples of marine species Supplementary_data_2.ena_table.samples.species.ancient.tsv : information about historical/ancient individual samples of marine species Supplementary_data_3.ena_table.samples.metagenomic.contemporary.tsv : information about contemporary/modern marine metagenomic samples Supplementary_data_4.ena_table.samples.metagenomic.ancient.tsv : information about historical/ancient marine metagenomic samples Supplementary_data_5.ena_table.taxa.species.contemporary.tsv : summary statistics at the species level for contemporary/modern individual samples Supplementary_data_6.ena_table.taxa.species.ancient.tsv : summary statistics at the species level for historical/ancient individual samples Supplementary_data_7.ena_table.taxa.metagenomic.contemporary.tsv : summary statistics for contemporary/modern marine metagenomic samples Supplementary_data_8.ena_table.taxa.metagenomic.ancient.tsv : summary statistics for historical/ancient marine metagenomic samples Supplementary_data_9.ena_table.taxa.species.contemporary.tsv.world.stats.libraries.tsv : summary statistics at the group level for contemporary/modern individual samples Supplementary_data_10.ena_table.taxa.species.ancient.tsv.world.stats.libraries.tsv : summary statistics at the group level for historical/ancient individual samples Supplementary_data_11.ena_table.taxa.metagenomic.contemporary.merged.tsv : summary statistics for marine metagenomes Supplementary_data_12.ena_table.samples.species.contemporary.tsv.timeline.merged.tsv : summary statistics for data availability over time Supplementary_data_13.ena_table.samples.species.contemporary.tsv.groups.tsv.annotated_ocean_bodies.tsv : information about contemporary/modern individual samples of marine species with appended geolocation information Supplementary_data_14.ena_table.samples.species.contemporary.tsv.groups.tsv.annotated_ocean_bodies.tsv.summary.tsv : summary of geolocation information by ocean body