Re-analysis of human and mouse stromal lung cells

Seurat objects used in "Stromal heterogeneity in the adult lung delineated by single-cell genomics". https://doi.org/10.1152/ajpcell.00285.2025 mNormBleoreannotated.rds : re-annotated Seurat object for mouse stromal cells hNormIPFreannotated.rds : re-annotated Seurat object for human stromal cells hLung0827.rds : original Seurat object used to generate hNormIPFreannotated.rds Update, July 1st, 2025 In the process of generating "hNormIPFreannotated.rds", the cells were accidentally downsampled to half. "hNormIPFreannotated.rds" should still work for annotation transfer. If you need an object without downsampling, you can use "hLung0827.rds", and in "Codes for human object.R", replace this code IPF2 <- subset(x = IPF, subset = disease == c("IPF", "Normal")) with IPF2 <- subset(x = IPF, subset = disease %in% c("IPF", "Normal"))