Matched Primary and Locally Recurrent Breast Tumors Distances at the Copy Number, RNA, and Protein levels

Copy number, RNA reads, and protein intensities -based inter-sample distance. "CN.distance" reports Cosine copy number-based pairwise distances between paired primary and locally recurrent breast cancers. "RNA.DISTANCE" and "PROTEIN.DISTANCE" reports RNA- and PROTEIN-based distance between the paired samples (as above).
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Distance was calculated with the following:
1 - Cosine similarity
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This dataset was used for Figure 4 in the following manuscript:
 "Proteogenomics decodes the evolution of human ipsilateral breast cancer". De Marchi T, Pyl PT, Sjöström M, Reinsbach SE, DiLorenzo S, Nystedt B, Tran L, Pekar G, Wärnberg F, Fredriksson I, Malmström P, Fernö M, Malmström L, Malmström J, Nimèus E. <em>accepted for publication</em>