Umethod benchmark: Processed single-cell RNA-seq datasets and marker-discovery comparison code
收藏资源简介:
This is a processed benchmark dataset collection and accompanying analysis code supporting the U-method manuscript (currently under revision at Nucleic Acids Research). It contains four publicly available single-cell RNA-seq datasets (Cords, Wu, Werba, Peng), provided here after processing and clustering, as ready-to-use Seurat objects for marker-discovery benchmarking. All four marker-discovery methods (U-method, Wilcoxon, COSG, Cepo) receive identical processed input, so the benchmark comparison begins at the marker-discovery step. This resource is intended to support reproducibility of the manuscript's benchmarking results and to serve as a reusable benchmark suite for future marker-discovery and post-clustering method development. Access is currently restricted while the associated manuscript undergoes peer review; it will be made openly available upon publication.



