The 229 chromosomes of the Atlas blue butterfly reveal rules constraining chromosome evolution in Lepidoptera

Supplementary data sets associated with the manuscript 'The 229 chromosomes of the Atlas blue butterfly reveal rules constraining chromosome evolution in Lepidoptera'.

Repeat libraries - generated using Earl Grey. Supplied in fasta format.

ilPolAtla1.1.primary.combined_library.fa.gz

ilPolIcar1.1.combined_library.fa.gz

Repeat annotations - generated using Earl Grey. Supplied in gff format.

ilPolAtla1.1.primary.filteredRepeats.gff.gz

ilPolIcar1.1.filteredRepeats.gff.gz

Lycaenidae phylogeny - supplied in newick format.

lycaenidae_phylogeny.supermatrix.backtrans_nucs.4815orthos.treefil

VCF files - generated using DeepVariant.

ilAriAges1.1.deepvariant.PASS.biallelic.repeat_filtered.vcf.q15.vaf02.vaf08.dp10.dp102.vcf.gz

ilAriArta2.1.deepvariant.PASS.biallelic.repeat_filtered.vcf.q15.vaf02.vaf08.dp10.dp53.vcf.gz

ilCelArgi3.2.deepvariant.PASS.biallelic.repeat_filtered.vcf.q15.vaf02.vaf08.dp10.dp59.vcf.gz

ilCyaSemi1.1.deepvariant.PASS.biallelic.repeat_filtered.vcf.q15.vaf02.vaf08.dp10.dp85.vcf.gz

ilGlaAlex1.1.deepvariant.PASS.biallelic.repeat_filtered.vcf.q15.vaf02.vaf08.dp10.dp77.vcf.gz

ilLycPhla1.2.deepvariant.PASS.biallelic.repeat_filtered.vcf.q15.vaf02.vaf08.dp10.dp107.vcf.g

ilLysBell1.1.deepvariant.PASS.biallelic.repeat_filtered.vcf.q15.vaf02.vaf08.dp10.dp104.vcf.gz

ilLysCori1.1.deepvariant.PASS.biallelic.repeat_filtered.vcf.q15.vaf02.vaf08.dp10.dp93.vcf.gz

ilPheArio1.1.deepvariant.PASS.biallelic.repeat_filtered.vcf.q15.vaf02.vaf08.dp10.dp286.vcf.gz

ilPleArgu1.3.deepvariant.PASS.biallelic.repeat_filtered.vcf.q15.vaf02.vaf08.dp10.dp43.vcf.gz

ilPolAtla1.1.deepvariant.PASS.biallelic.repeat_filtered.vcf.q15.vaf02.vaf08.dp10.dp68.vcf.gz

ilPolIcar1.1.deepvariant.PASS.biallelic.repeat_filtered.vcf.q15.vaf02.vaf08.dp10.dp66.vcf.gz

ilPolIphi1.1.deepvariant.PASS.biallelic.repeat_filtered.vcf.q15.vaf02.vaf08.dp10.dp89.vcf.gz