BioMaster: Multi-agent System for Automated Bioinformatics Analysis Workflow

This repository contains supplementary materials for the manuscript "BioMaster: Multi-agent System for Automated Bioinformatics Analysis Workflow". BioMaster is a knowledge-enabled multi-agent framework designed to automate complex bioinformatics workflows, integrating workflow planning, execution, real-time error recovery, and rigorous output validation into a unified architecture. The system employs a dual Retrieval-Augmented Generation (RAG) mechanism to support domain-specific tool selection, parameter optimization, and adaptation to emerging methods.