Estimating transport and detectability of Chironex fleckeri eDNA in an open coastal bay

The code, data, and animations contained within this github is used to undertake particle releases emulating eDNA and to process associated data. ParticleRelease - this is the code for releasing particles from set locations with the hydrodynamic model.Visualisation-MapPlots - this is the code for visualising released particles on maps.ParticleDistance - this is the code for determining the distances at which particles travelled from the initial release point for each timestep.BoundaryBoxSummer/Winter - this is the code for determining the relative abudance of particles within a defined area.Log-normalised Relative eDNA particle concentration map plots - this is the code for determining the detectability of eDNA from release locations.Animation S4.1-S4.12 - these are animations of particles releases for all Scenarios.ScenarioA-H_relative_abundance_inside/outsideHSB - these are data associated with the relative abundance of particles within and outside of Horseshoe Bay. Summer/Winter-ParticleDistance - these are data associated with particle distance travelled from source locations. The code needed to create the hydrodynamic model for this can be found within the SLIM gitub (https://git.immc.ucl.ac.be/slim/slim/-/wikis/home) For permission to use this code - please contact Scott Morrissey ([e-mail])