Summary of results for the genome-wide association study using a mixed linear model and a sex-stratified case-control analysis for canine congenital sensorineural deafness in Dalmatian dogs.

The SNP-ID, the position on dog chromosome (CFA) in base pairs (bp) according to CanFam3.1 and CanFam2.0, minor allele, minor allele frequency (MAF) for all, affected (MAFa) and unaffected (MAFu) dogs (controls), variance explained by the respective SNP (VE) and -log10P-values (-log10P) from the mixed linear model analysis and positional candidate genes with their distance to the CCSD-associated SNP are given. SNPs downstream of the nearest candidate gene are marked with a plus sign (+) and SNPs upstream of the nearest candidate gene are marked with a minus sign (−). Odds ratios (OR) are from a case-control study stratified by sex with 95% confidence intervals (CI).