OzWheat V1.0 SNP data assets
收藏DataCite Commons2026-04-28 更新2025-04-09 收录
下载链接：
https://data.csiro.au/collection/csiro%3A54994v17
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资源简介：
Single nucleotide polymorphism genotypes for ~300 varieties from the OzWheat diversity panel generated with alternative platforms combined in a single matrix. Original platform source files are also provided.
Transcript SNPs:
63,222 SNP loci. 298 wheat lines.
File=OzWheat_Transsnp_filtered_CS1.0_231130.hmp.txt
90K Illumina SNP array:
23362 SNP loci. 286 wheat lines from OzWheat panel 1 and 300 lines from OzWheat panel 2.
File=V1_V2_commonSNP_merged.hmp
40K Illumina SNP array:
10670 SNP loci. 286 wheat lines.
File=OW1_40K_filtered.hmp.txt
DARTseq:
56467 SNP loci. 282 wheat lines.
File=Report_DW21-6152_SNP_mapping_2.csv
Combined platform SNP - joins SNPs called from transcriptome data, 90K and 40K array and DARTseq.
115,260 SNP loci. 296 wheat lines.
File=OzWheat_Transsnp40k90kDArT_filtered_CS1.0_alleleinfo_240102.hmp.txt
Keeble-Gagnère G, Pasam R, Forrest KL, et al. Novel Design of Imputation-Enabled SNP Arrays for Breeding and Research Applications Supporting Multi-Species Hybridization. Front Plant Sci. 2021;12:756877. Published 2021 Dec 22. doi:10.3389/fpls.2021.756877
提供机构：
CSIRO
创建时间：
2025-03-06
