Supplemental Material for Zhao et al., 2020

Supplementary Tables:Table S1: Table showing information of 17 de novo assemblies used in this study. Table S2: Table showing information of 279 next-generation sequencing samples used in this study. Table S3: Table showing identifying euchromatic and non-euchromatic gaps. Table S4: Table showing euchromatic gaps and non-euchromatic gaps information. Table S5: Table showing all of the gap-closing sequences in 17 human de novo assemblies, four non-human primate genomes and other NRS datasets. Table S7: Table showing the gap-closing sequences closed by NA24385 with MUMmer in QUAST.Supplementary Figures:Figure S1: Comparision between gap-closing sequences involved in the closed gaps from minimap2 and MUMmer in the individual genome NA24385. Figure S2: Non-redundant gap-closing seuqneces covered by unmapped reads from SGDP dataset. Figure S3: Promoter regions associated with CpG islands predicetd by CpGProD in non-reference gap-closing sequneces.

补充表格：表S1：展示本研究中使用的17个从头组装的信息。表S2：展示本研究中使用的279个下一代测序样本的信息。表S3：展示识别常染色质和非常染色质间隙的信息。表S4：展示常染色质间隙和非常染色质间隙的信息。表S5：展示17个人类从头组装、四个非人类灵长类基因组以及其他NRS数据集中所有间隙闭合序列。表S7：展示由NA24385在QUAST中使用MUMmer闭合的间隙闭合序列。补充图表：图S1：比较个体基因组NA24385中由minimap2和MUMmer闭合的间隙所涉及的间隙闭合序列。图S2：由SGDP数据集中未映射读取覆盖的非冗余间隙闭合序列。图S3：与非参考间隙闭合序列相关的启动子区域，由CpGProD预测的CpG岛。