Three reference genomes for freshwater diatom ecology and evolution

This repository contains the genome assemblies and gene models provided for "Three reference genomes for freshwater diatom ecology and evolution" Authors: Wade R. Roberts (email: wader [at] uark [dot] edu) Andrew J. Alverson (email: aja [at] uark [dot] edu) The Whole Genome Shotgun (WGS) projects are available from NCBI GenBank under accession JALLPB020000000 (C. tholiformis), JALLBG020000000 (D. pseudostelligera), and JALLAZ020000000 (P. triporus). The following files are included: Cyclostephanos tholiformis strain AJA228-03 aja228-03.consensus.fasta aja228-03.consensus.gff3 aja228-03.consensus.proteins.fasta aja228-03.consensus.combined_uniprot_annotation.csv aja228-03.consensus.panther_annotation.csv aja228-03.consensus.pfam_annotation.csv Discostella pseudostelligera strain AJA232-27 aja232-27.consensus.fasta aja232-27.consensus.gff3 aja232-27.consensus.proteins.fasta aja232-27.consensus.combined_uniprot_annotation.csv aja232-27.consensus.panther_annotation.csv aja232-27.consensus.pfam_annotation.csv Praestephanos triporus strain AJA276-08 aja276-08.consensus.fasta aja276-08.consensus.gff3 aja276-08.consensus.proteins.fasta aja276-08.consensus.combined_uniprot_annotation.csv aja276-08.consensus.panther_annotation.csv aja276-08.consensus.pfam_annotation.csv R code and phylogenetic tree to reproduce Figure 1 in the manuscript plot-figure-1.R busc.prot.concat.partition.rooted.tree