T1w/T2w ratio Myelin Maps - CamCAN

Myelin maps in subject-space in the CamCAN dataset CamCAN: release004/BIDS_20190411/anat ; inputs are defined in the JSON file MRI preprocessing: T1 and T2 images were skull-stripped (mri_synthstrip), bias corrected (N4BiasFieldCorrection), intensity normalized (ImageMath), and resliced/resampled to T1 space when needed (mri_vol2vol) Myelin mapping: T1w/T2w ratio based on code hosted at brainlife.io (https://brainlife.io/app/60355b8a3a0011acbb52c3c5) OUTPUT: myelin_maps_subjects.txt: List of subject IDs. Myelin maps were concatenated in this order myelin_maps_652subj_T1space.nii.gz: Myelin maps in subject-space, concatenated along the 4th dim. Myelin values may be scaled between 0 and 5 for visualization purposes. Dependencies: freesurfer: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb846 ANTs: version 2.5.0.post9-gc40a681 connectome workbench: version 2.0.1