Additional file 9 of nanotatoR: a tool for enhanced annotation of genomic structural variants
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Additional file 9: Supplementary Table S8. Genes overlapping deletion variants for NA12878. Chromosome and SV breakpoint start and end are shown in: - NA12878 (Mak et.al. (2016) hg38 annotation): Overlapping genes coordinates identified in the original paper by Mak et al. 2016, with hg38 reference genome annotation. - NA12878 (Mak et.al. (2016) hg19 liftOver): Overlapping genes coordinates identified in the original paper by Mak et al. 2016, lifted over to hg19. - NA12878 (nanotatoR SVmerge annotation): Overlapping genes coordinates for NA12878 labelled by BSPQI and BSSSI enzyme (SVmerge), as annotated by nanotatoR. - NA12878 (nanotatoR DLE annotation): Overlapping genes coordinates for NA12878 labelled by DLE1 enzyme (SVmerge), as annotated by nanotatoR.
