Condition-specific gene coexpression in ATTED-II (LS index)

The coexpression index has changed in recent versions of ATTED-II. ATTED-II ver 11: z-score of LS index (larger value indicates stronger coexpression) ATTED-II ver 10: LS index (larger value indicates stronger coexpression) ATTED-II ver 4 to ver 9: MR index (smaller value indicates stronger coexpression) To continue providing the condition-specific gene coexpression data, they were converted to z-score of the LS index. ATTED-II ver 6.0 (September 2010): MR index. AGI (Arabidopsis Genome Initiative) code. ATTED-II ver 11.0 (February 2021): z-score of the LS index. EGI (Entrez Gene ID)code. <strong>Reference of condition-specific gene coexpression data in ATTED-II</strong><br> Obayashi et al. (2011) ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants. Plant Cell Physiol. 52. 213-9.<br> https://pubmed.ncbi.nlm.nih.gov/21217125/ <strong>Detail of the condition-specific gene coexpression data</strong><br> The condition-specific gene coexpression data are based on the following AtGenExpress expression data.<br> https://www.arabidopsis.org/portals/expression/microarray/ATGenExpress.jsp bio: AtGenExpress biotic treatment ME00341 (Carine Denoux , Fred Ausubel , Julia Dewdney , Simone Ferrari) ME00353 (Xinnian Dong) ME00331 (Birgit Kemmerling , Thorsten Nürnberger) ME00332 (Frederic Brunner , Thorsten Nürnberger) ME00342 (Dierk Scheel , Frederic Brunner , Lore Westphal) ME00354 (Fred Ausubel , Julia Dewdney) hor: AtGenExpress hormone treatment ME00333 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada) ME00334 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada) ME00335 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada) ME00336 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada) ME00337 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada) ME00343 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada) ME00344 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada) ME00352 (Hideki Goda , Yukihisa Shimada) ME00356 (Takatoshi Kiba , Takeshi Mizuno) ME00357 (Hideki Goda , Shigeo Yoshida , Tadao Asami , Yukihisa Shimada) ME00358 (Hideki Goda , Shigeo Yoshida , Tadao Asami , Yukihisa Shimada) ME00359 (Hideki Goda , Shigeo Yoshida , Tadao Asami , Yukihisa Shimada) ME00360 (Hideki Goda , Shigeo Yoshida , Tadao Asami , Yukihisa Shimada) lig: AtGenExpress light treatment ME00345 (Thomas Kretsch) str: AtGenExpress stress series ME00325 (Cecilia D`Angelo , Joachim Kilian , Joerg Kudla , Oliver Batistic , Stefan Weinl) ME00326 (Holger Puchta , I-Peng Chen) ME00327 (Cecilia D`Angelo , Joachim Kilian , Joerg Kudla , Oliver Batistic , Stefan Weinl) ME00328 (Cecilia D`Angelo , Joachim Kilian , Joerg Kudla , Oliver Batistic , Stefan Weinl) ME00329 (Jakub Horak , Klaus Harter) ME00330 (Dierk Wanke , Klaus Harter) ME00338 (Cecilia D`Angelo , Joachim Kilian , Joerg Kudla , Oliver Batistic , Stefan Weinl) ME00339 (Lutz Nover , Pascal von Koskull-Döring) ME00340 (Andrea Ditzer , Dorothea Bartels , Hans-Hubert Kirch) tis: AtGenExpress development ME00319 (Detlef Weigel , Jan Lohmann , Markus Schmid)