Intramolecular interactions between folded and disordered regions shape ubiquilin structure and function

Simulation Data for: Intramolecular interactions between folded and disordered regions shape ubiquilin structure and function Authors: Jess Niblo, Nirbhik Acharya, Max Watkins, Thuy P. Dao, Carlos A. Castañeda, Shahar Sukenik This repository contains the trajectory data from molecular dynamics simulations included in "Intramolecular interactions between folded and disordered regions shape ubiquilin structure and function". Simulations were performed using CALVADOS3COM. Trajectory files are in .dcd format and come with an accompanying topology pdb file. File description: Dsk2.zip : Representative CALVADOS trajectories of Dsk2 FL and dHS1, dHS2, dHS3 Reconstructed_Ensembles.zip : Experimental SAXS derived ensembles of the open and closed topologies See analysis repository at: https://github.com/sukeniklab/UBQLN_interactions_2026