Details of 643 mRNA-lncRNA pairs meeting the following criteria: the mRNA can be modeled using lncRNAs with R2 > = 0.2 and empirical p-value < 0.01, the lncRNA has an OLS p-value < = 1E-10 in the linear model for the mRNA, and their pairwise correlation coefficient is > = 0.1 in absolute value.

Gene.ID, Gene.Name: identify of target gene (mRNA); lncRNA.ID, lncRNA.Name: identity of lncRNA; OLS P-value: p-value of coefficient of lncRNA in OLS model of mRNA; R2: test R2 of model, averaged over five folds of cross-validation; Columns G-K indicate relationship between mRNA and lncRNA; Columns L-N indicate if an overlapping pair is tandem (same direction), convergent or divergent; dist: distance between lncRNA and mRNA genes, -1 means overlapping, ‘X’ means not on the same chromosome; Column P (“Corr Coeff”) is Pearson correlation coefficient between mRNA and lncRNA expression.
(XLSX)