AD Model Builder and AutoHotkey Code for Evaluating Genetic Stock Identification Software

AD Model Builder .tpl and .dat files and AutoHotkey script for conducting simulations described in Brenden, T.O., J.R. Bence, W. Liu, I. Tsehaye, and K.T. Scribner. In press. Comparison of the accuracy and consistency of likelihood-based estimation routines for genetic stock identification. Methods in Ecology and Evolution combined.ahk - AutoHotkey script for running ONCOR and SPAM main.dat - AD Model Builder .dat file containing factors and factor levels to evaluate during simulations main.tpl - AD Model Builder .tpl file which is the driver program that loops over the factor levels and repeatedly calls the simulation program to produce a dataset and calls the other estimation routines to analyze the dataset mixbayes.tpl - AD Model Builder .tpl that implements the conditional penalized maximum likelihood estimation routine. This file also generate the files (baseline, mixture, control program) needed to run SPAM and ONCOR mixbayes_MLE.tpl - AD Model Builder .tpl that implements the condition maximum likelihood estimation routine. sim.tpl - AD Model Builder .tpl that simulates the actual source population and mixture data for a given combination of factor levels These files are provided without warranty of any kind and in no event shal the authors be liable for any claim, damages or any liabilit.