Additional file 3 of Infants with cystic fibrosis have altered fecal functional capacities with potential clinical and metabolic consequences

Additional file 3: Supplementary Table 1. Differentially abundant modules and pathways between CF and control infants. Supplementary Table 2. Differentially abundant modules and pathways between exclusively breast fed and exclusively formula fed CF infants. Supplementary Table 3. Differentially abundant modules and pathways between exclusively breast fed and exclusively formula fed healthy infants. Supplementary Table 4. Differentially abundant modules and pathways between CF infants on antibiotics and off antibiotics. Supplementary Table 5. FishTaco-estimated contributions of taxonomic drivers to functional shifts for within-CF dietary and antibiotics usage comparisons. Supplementary Table 6. Differentially abundant modules and pathways between control infants various dietary and antibiotics usage cohorts of CF infants. Supplementary Table 7. MIMOSA-estimated contributions of taxa to variation in CF infant fecal metabolites at month 12. Supplementary Table 8. Summary of infant diet and antibiotic statistics by age.