Genome architecture used to supplement species delineation in two cryptic marine ciliates (study on congeneric tintinnid ciliates Schmidingerella arcuata and Schmidingerella meunieri (published as Smith et al. 2022 in Molecular Ecology Resources)

These data are associated with the following publication:

Genome architecture used to supplement species delineation in two cryptic marine ciliates

Susan A. Smith, Luciana F. Santoferrara, Laura A. Katz, George B. McManus

Molecular Ecology Resources

2022

Article DOI: 10.1111/1755-0998.13664

For clarification regarding these data, included is a table listing the GenBank accession numbers attributed to these files on NCBI: Accessions_Schmid_Smith_et_al_2022.docx

Included here:

For both Schmidingerella arcuata and Schmidingerella meunieri:

-micronuclear genome (MIC) assembly

-macronuclear transcriptome (MAC) assembly

-rDNA sequences (SSU, LSU, ITS) used for initial barcode data

-sequences used for isolate-specific primer analysis from Table S2

-Word Doc with Supplementary Information:

Table S1. Micronuclear pattern details 
Table S2. Isolate-specific primer details 
File S3. Micronuclear pattern sequences used for Figure 8 (fully annotated)

Data Availability Statement copied directly from Smith et al 2022:

This project has been deposited at NCBI under the Bioproject IDs: PRJNA829814 (S. arcuata) and PRJNA828278 (S. meunieri). The MIC and MAC data can be found under the GenBank accession nos. JAMFLK000000000 (MIC genome), GISN00000000 (MAC transcriptome), SRR11933493 (MIC raw reads) and SRR18847964 (MAC raw reads) for S. arcuata; and JAMFLJ000000000 (MIC genome), GJXX00000000 (MAC transcriptome), SRR19268018 (MIC raw reads) and SRR18847682 (MAC raw reads) for S. meunieri. Barcode sequences (rRNA) were deposited in GenBank under the accession nos. ON430520 (SSU), ON430522 (LSU) and ON430517 (ITS) for S. arcuata. For S. meunieri, rRNA gene barcode sequences are deposited under the accession nos. ON430519 (SSU), ON430521 (LSU) and ON428215 (ITS). Isolate‐specific primers and sequences are available on GenBank under the accession nos. ON677305, ON677306, ON677307 and ON677308. These data and a file containing the sequences from Figure 8 are also available on FigShare at https://doi.org/10.6084/m9.figshare.16892893 (Smith et al., 2022a, 2022b, 2022c).