Processed data for the sRNA landscape chapter

<strong>Processed data to be used in analyses related to the sRNA landscape. </strong> <strong>mRNA-seq processed data (raw and scaled counts):</strong> Original mRNA-seq fastq files: Stem trichomes of Moneymaker: dataset available here Stem trichomes of LA0716: dataset available here Stem trichomes of PI127826: dataset available here Bald stems, leaf primordia and leaves of Moneymaker, LA0716 and PI127826: datasets are available here. Samples S28 to S48 were used. Software: Snakemake RNA-seq release 0.3.4 raw_counts.parsed.tsv: contains the raw counts that can be used for differential expression analysis (e.g. with DESeq2). scaled_counts.tsv: contains counts that are scaled between samples. This can be used for heatmap creation or PCA analysis for instance. NOT for differential analysis. samples.tsv.: a file listing the fastq files analysed. config.yaml: a file that contains the parameters used when running the pipeline. <pre><code class="language-markdown">| tube | accession | tissue | |-------------- |-------------- |-------------------- | | SQ28 | Moneymaker | leaf primordium | | SQ29 | PI127826 | leaf primordium | | SQ30 | LA0716 | leaf primordium | | SQ31 | Moneymaker | bald stem | | SQ32 | Moneymaker | bald stem | | SQ33 | Moneymaker | bald stem | | SQ34 | PI127826 | bald stem | | SQ35 | PI127826 | bald stem | | SQ36 | PI127826 | bald stem | | SQ37 | LA0716 | bald stem | | SQ38 | LA0716 | bald stem | | SQ39 | LA0716 | bald stem | | SQ40 | Moneymaker | leaf | | SQ41 | Moneymaker | leaf | | SQ42 | Moneymaker | leaf | | SQ43 | PI127826 | leaf | | SQ44 | PI127826 | leaf | | SQ45 | PI127826 | leaf | | SQ46 | LA0716 | leaf | | SQ47 | LA0716 | leaf | | SQ48 | LA0716 | leaf | | LA0716_1 | LA0716 | trichomes | | LA0716_2 | LA0716 | trichomes | | LA0716_3 | LA0716 | trichomes | | LA0716_4 | LA0716 | trichomes | | Moneymaker_1 | Moneymaker | trichomes | | Moneymaker_2 | Moneymaker | trichomes | | Moneymaker_3 | Moneymaker | trichomes | | Moneymaker_4 | Moneymaker | trichomes | | PI127826_1 | PI127826 | trichomes | | PI127826_2 | PI127826 | trichomes | | PI127826_3 | PI127826 | trichomes | | PI127826_4 | PI127826 | trichomes |</code></pre>