Additional file 1 of Polyglutamine-expanded ATXN7 alters a specific epigenetic signature underlying photoreceptor identity gene expression in SCA7 mouse retinopathy

Additional file 1: Table S1. List of the primers used in the study. Table S2. Photoreceptor specific gene dataset. Table S3. Housekeeping gene dataset. Table S4. CRX direct gene targets. Table S5. NRL direct gene targets. Table S6. Genes downregulated in SCA7 (FC < 0.7, p < 0.05). Table S7. 71 genes coding for proteins located in cilium and OS structures and downregulated in SCA7. Table S8. Genes upregulated in SCA7 (FC > 1.3, p < 0.05). Table S9. Occurrence of TF binding motifs in genomic loci associated with cluster 10. Table S10. Genomic coordinates of 268 super-enhancers predicted by ROSE. Table S11. Genic properties of lncRNAs identified in the retina.