Additional file 1 of Genomic classification and antimicrobial resistance profiling of Streptococcus pneumoniae and Haemophilus influenzae isolates associated with paediatric otitis media and upper respiratory infection

Additional file 1: Table S1. Clinical metadata. Table S2. Kraken 2 contig classifications weighted by contig length (% total assembly size) for S. pneumoniae isolates. Table S3. Assembly statistics from Pathogenwatch for S. pneumoniae isolates. Table S4. Serotype, MLST sequence typing, AMR profile, and select clinical metadata for S. pneumoniae isolates. Table S5. Additional AMR predictions compared to clinical metadata for S. pneumoniae isolates. Table S6. Penam resistance hits from CARD results. Table S7. FastANI results for S. pneumoniae isolate 1001 compared to NCBI-Genbank S. pneumoniae strains. Table S8. Sequence type, serotype and AMR profile for S. pneumoniae isolate 1001's closest related S. pneumoniae strains. Table S9. VFDB comparison of virulence factor genes across select S. pneumoniae strains. Table S10. Kraken 2 contig classifications weighted by contig length (% total assembly size) for H. influenzae isolates. Table S11. Assembly statistics from Pathogenwatch for H. influenzae isolates. Table S12. MLST sequence typing and select clinical metadata for H. influenzae isolates. Table S13. Beta-lactamase hits from CARD results.