PublicData

chdgene_table.csv --> CHDgene list released 2024-04-05 (https://chdgene.victorchang.edu.au/) doi: 10.1161/CIRCGEN.121.003539 Cotney_CirRes_316709_online_table_v.xlsx --> Gini index 2020-08-09 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7554226/) doi: 10.1161/CIRCRESAHA.120.316704 E-MTAB-6814.sdrf.txt --> metadata on how to download mammalian organ development doi: 10.1038/s41586-019-1338-5 LncBook_id_conversion.csv and LncBookv1.9_GENCODEv33_GRCh38.gtf.gz --> lncbook 2.0 metadata on id conversion and gtf annotation file https://ngdc.cncb.ac.cn/lncbook/ doi: 10.1093/nar/gkac999 lncExpDB_E-MTABGeneTPM.tsv --> LncExpDB RNA-seq data https://ngdc.cncb.ac.cn/lncexpdb/ doi: 10.1093/nar/gkaa850 RNACentral_ensembl.tsv and RNACentral_lncbook.tsv --> RNA central ensembl and lncbook identifiers https://rnacentral.org/ https://doi.org/10.1093/nar/gkw1008 UCSC_hg19ToHg38.over.chain --> Liftover chain file from ucsc genome browser https://hgdownload.cse.ucsc.edu/goldenpath/hg19/liftOver/ DOI: 10.1093/nar/gkad987