Mammalian low cell number and in vivo DamID-seq for transcription factor binding analyses

Mammalian low cell number and in vivo DamID-seq for transcription factor binding analyses Overall design: DamID-seq peaks were called for Oct4 from mouse embryonic stem cells (mESC), late streak, early bud mouse embryos (LSEB) and DamID-seq peaks were called for Sox2 from ES-derived neural stem cells (NSC) DNase-seq hyper-sensitivity data was downloaded from GEO with the BioSample accession number GSM1014154 and compared with DamID-seq signal for E14 mouse embryonic stem cells. This data is linked below as DNase-seq_GSM1014154.tar. ChIP-Seq raw data was downloaded from GEO (GSE11724, GSE44286, GSE56098) and ERA (ERR216111, ERR414096, ERR414097). Peaks called from Oct4 ChIP-seq were compared to Oct4 DamID-seq peaks for E14 mouse embryonic stem cells. This data is linked below as ChIP-Seq_reanalysis.tar.