Long-read transcriptome data (Iso-Seq) of the human and mouse brain

Datasets from "Full-length transcript sequencing of human and mouse cerebral cortex identifies widespread isoform diversity and alternative splicing", SK.Leung, A.Jeffries. et al. (2021)

Deposited files are generated from running Cupcake, SQANTI2 (v7.4) and filter. 
Note, only the files generated from SQANTI2 filtering are deposited. 
To re-run SQANTI, use the files in cupcake_collapse folder as input. 

Please refer to code (https://github.com/SziKayLeung/Whole_Transcriptome_Paper) for more information. 

Datasets: 
- AdultCTX: Adult human prefrontal cortex tissue (n = 4) merged dataset
- FetalCTX: Fetal human prefrontal cortex tissue (n = 3) merged dataset
- FetalHIP: Fetal human hippocampus tissue (n = 2, subset of FetalCTX) merged dataset
- FetalSTR: Fetal human striatum tissue (n = 2, subset of FetalCTX) merged dataset
- MouseCTX: Mouse entorhinal cortex tissue (n = 12) merged dataset