Results of limma statistical analysis on the data obtained from SWATH-MS.

Additional data (Uniprot ID, Locus tag, location, COG and computational prediction for the presence of signal peptide, protein secretion and subcellular localization) is shown for differentially expressed proteins. The table presents the estimation of Log2-fold-change [log2FC(Δzur/WT)] for the contrast of WT and Δzur exoproteomes. The left (CI.L) and right (CI.R) limits of the 95% confidence interval for log2FC provide a measure of the precision of the log2-fold change estimation. The table also includes the average log2-expression (AveExpr), the moderated t-statistic (t), the p-value, and the false discovery rate (FDR or q-value) obtained after Benjamini–Hochberg correction of the p-value. Additionally, the table includes the log-odds measure (B), which indicates the likelihood that the protein is differentially expressed. Prediction of subcellular localization, of signal peptides, of nonclassical protein secretion, and type of secretion systems was performed as indicated in Materials and methods.
(XLSX)