Polymerase Structure Alignments - v4 Update (July 2022)
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https://zenodo.org/record/3361874
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资源简介：
v4 update (July 2022) of superposed viral polymerase structures using the methodology described in
A Comprehensive Superposition of Viral Polymerase Structures by Olve Peersen, Viruses 2019 11(8) 745.
• _All_PDBs_v4.zip contains a single directory with coordinate files for 917 structures taken from 628 PDB entries. Uncompressed size is 1.6 GB.
• Polymerases_v4.zip contains the complete set of files from the superpositions, including the _All_PDBs/ directory. Uncompressed size is 5.7 GB.
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POLYMERASE STRUCTURES community page at Zenodo.org
v4 Release July 19, 2022
917 structures from 628 PDB entries
http://www.zenodo.org/communities/pols/
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This directory contains a large collection viral polymerase structure coordinates that have been superposed using the methods described in Peersen, Viruses 2019, 11(8), 745.
They are released into the public domain under the Creative Commons Attribution (CC BY) license.
Please cite the following two references for any derivative work:
1) Reference to the publication describing the methodology:
Peersen, OB
A Comprehensive Superposition of Viral Polymerase Structures.
Viruses 2019, 11(8), 745
https://doi.org/10.3390/v11080745
2) DOI reference that always resolves to the latest release of the dataset:
Peersen, OB
Polymerase Structure Alignments
https://doi.org/10.5281/zenodo.3361874
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Olve Peersen Olve.Peersen@ColoState.edu
Professor
Biochemistry & Molecular Biology
1870 Campus Delivery
Colorado State University
Ft. Collins, CO 80523-1870
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v4 220719 - Many updates and several news sets, as outlined below.
The total count is now 917 polymerase structures from 628 PDB entries
2-rddp: Foamyvirus FOAM added, but rest of set left unchanged
3-dsdn: Simplified as hsv1 was pulled into its own set (see below)
NEW alph: Alphaviruses - RRV: 7f0s,
SINV: 7vb4, 7vw5
aren: Lassa: 7ckl, 7ela, 7och, 7oe3, 7oe7, 7oea, 7oeb,
7ojj, 7ojk, 70jl, 7ojn
Machupo: 7ckm, 7el9, 7elb, 7elc, 7vgq, 7vh1, 7vh2, 7vh3
buny: RVF: 7eei
LaCrosse: 7ori, 7orj, 7ork, 7orl, 7orm, 7orn, 7oro
coro: 7dfg, 7dfh, 7doi, 7dok, 7dte, 7ed5, 7egq, 7eiz, 7krn, 7kro, 7krp,
7oyg, 7ozu, 7ozv, 7rdx, 7rdy, 7rdz, 7re0, 7re1, 7re2, 7re3, 7thm
fluv: 7nha, 7nhc, 7nhx, 7ni0, 7nik, 7nil, 7nir, 7nis, 7nj3, 7nj4, 7nj5,
7nj7, 7nk1, 7nk2, 7nk4, 7nk6, 7nk8, 7nka, 7nkc, 7nki, 7nkr, 7z42,
7z43, 7z43, 7z4o, 7z4o
NEW foam: Foamyviruses - 7o0g, 7o0h, 7024
Created FOAM.pdb from core of 7o0g.pdb, which was
superposed on rddp set, but the orientations of other
members of that set (HIV,MMLV,TERT) were not updated.
NEW hsv1: Herpes Simplex Virus - 2gv9, 7luf
pest: Classic Swine Fever Virus: 7ekj
poxv: 7amv, 7aof, 7aoh, 7aoz, 7ap8, 7ap9
rb69: 2atq, 7f4y
tavp: 7om2, 7om6, 7om7, 7om9, 7oma
创建时间：
2022-07-19
