Data for paper: The making of a genetic cline: introgression of oceanic genes into coastal cod populations in the North East Atlantic

Files included in this data package includes data, scripts and a simulation program to replicate
simulations of genetic divergence patterns and comparision with observations, as described in the paper.

Filename: content
coastalcoddata.csv: genotypes and metadata, described in detail below
IBD.dat: data, pairwise observed Fst among cod samples
report_pairwise_Fst_Vikingbank.R: R-script to extract relevant data from IBD.dat
connectivity_matrix.txt: output from oceanographic modelling, for simulations
popfile.dat: population data, for simulations
simmat: compiled simulation program (linux 64 bit, dynamically linked)
simmat.c: C source code for simmat simulation program
simloop.R: R-script for running simulations

(R.scripts uses the R computing environment: https://www.r-project.org/)

The coastalcoddata.csv file contains SNP genotypes and metadata for individual cod (one line per individual),
coastal cod as well as reference samples:

Column name: Explanation
RefSamp: ...