Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning-enabled molecular diagnostics

Zenodo2019-09-29 更新2026-04-07 收录

下载链接：

https://zenodo.org/record/3591847

下载链接

链接失效反馈

官方服务：

资源简介：

Datasets for manuscript "Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning-enabled molecular diagnostics" Metadata.zip phenotypes.txt: tabular file containing binary resistance phenotypes based on CLSI guidelines, where the rows are the isolates and the columns correspond to different drugs. Resistance : 1, susceptibility: 0, missing: intermediate resistant Features_gpa_exp_snps.zip We provide the processed molecular data as Numpy compressed files (npz.). You can use the Numpy load method to read in these tables https://docs.scipy.org/doc/numpy/reference/generated/numpy.load.htm. The row (strains_list) and column labels (feature_lists) are stored separately. genexp: gene expression table directory genexp_feature_vect.npz: The feature matrix in the numpy format genexp_feature_list.txt: The columns of the feature matrix (features) genexp_strains_list.txt: The rows of the feature matrix (isolates) gpa: gene presence/absence table directory gpa_feature_vect.npz: The feature matrix in the numpy format gpa_feature_list.txt: The columns of the feature matrix (features) gpa_strains_list.txt: The rows of the feature matrix (isolates) snps: SNPs table directory snps_feature_vect.npz: The feature matrix in the numpy format snps_feature_list.txt: The columns of the feature matrix (features) snps_strains_list.txt: The rows of the feature matrix (isolates)

提供机构：

Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Lab, Berkeley, USA AND Molecular Cell Biomechanics Laboratory, Departments of Bioengineering and Mechanical Engineering, University of California, Berkeley, USA; Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany AND German Center for Infection Research, Braunschweig, Germany; Servicio de Microbiología and Unidad de Investigación Hospital Universitario Son Espases, Instituto de Investigación Sanitaria Illes Balears, Palma de Mallorca, Spain; Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany AND Molecular Cell Biomechanics Laboratory, Departments of Bioengineering and Mechanical Engineering, University of California, Berkeley, USA; Tzu-Hao Kuo; Institute of Medical Microbiology and Infection Control, University Hospital Frankfurt, Frankfurt/Main, Germany; Computational Biology of Infection Researc

创建时间：

2019-09-29