N-eQTLs.

For each of the N-SNPs filtered out due to it being polymorphic in Africans, we annotated the gene it regulates in GTEx, whether that gene is differentially expressed in Moyerbrailean et al [30], and if the SNP was validated by BiT-STARR-seq. Columns 1–43 are: 1) Chromosome; 2) Position; 3) rsID; 4) GTEx SNP ID. "NA" indicates the SNP is not an eQTL in GTEx; 5) Modern human allele; 6) Neanderthal allele; 7) Global allele frequency, 8) Ensembl gene id, 9) Gene symbol, 10–41) Treatments from Moyerbrailean et al [30]. "1" indicates the gene is differentially expressed in that condition in at least one cell type, 42) "1" indicates the gene is not differentially expressed in response to any treatment 43) BiT-STARR-seq results. NA indicates SNP was not tested, 0 indicates it was not validated, and 1 indicates validation. (TXT)