Additional file 11 of MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities

Additional file 11: Table S7.Comparisons of Enzyme annotations between MetaPro and HUMAnN2 for NOD mouse, kimchi, and human oral biofilm datasets. This table compares the ECs of MetaPro against HUMAnN2 on the NOD mouse, kimchi, and human oral biofilm datasets.  The HUMAnN2 ECs were filtered for EC co-occurrence pairs that were not found in Swiss-Prot, and multiple unique ECs that annotated to the same gene family.  The resulting HUMAnN2 ECs were contrasted against MetaPro’s EC, yielding a common set of ECs found in both tools, ECs found only by MetaPro, and ECs found only by HUMAnN2.  The same comparison is shown for MetaPro’s high-qaulity EC predictions.