assessPool: a flexible pipeline for population genomic analyses of pooled sequencing data

Example input datasets for assessPool. These inputs were generated from pooled ezRAD samples of Montipora capitata collected at 10 different islands (one island per pool) in the Hawaiian Archipelago. Each pool consists of 24-57 indivudual samples, pooled equimolarly. Raw MiSeq reads were first trimmed using Trim Galore!, a de novo-assembled reference genome (reference.fasta.gz) was assembled using SPAdes, and trimmed reads were mapped to this reference with bwa-mem. Varriant calling was performed using FreeBayes to generate the input VCF. Additionally included are truncated versions of the full dataset.