Data from - Adaptation to Plant Defense in an Agricultural Insect Pest: Integrating Genome Scans and Gene Expression in the Soybean Aphid Reveals a Muti-genic Pathways

Uploaded of additional datasets and products associated with the manuscript "Adaptation to Plant Defense in an Agricultural Insect Pest: Integrating Genome Scans and Gene Expression in the Soybean Aphid Reveals a Muti-genic Pathways". Overview of files included in this release: The hologenome used for mapping raw illumina short reads: holo_agly_b4_r2.1.fa SNPEff annotated SNPs for the aggregated data (the 21 sampled-pools): aphidpool.PoolSeq.PoolSNP.05.5.24Jun2021.ann.new.vcf.gz The maximum-likelihood estimates of reference allele frequencies for all SNPs in the 21 sampled-pools: imputedML_REFAlleleFrequencies_pools.txt DESeq2 normalized read counts table for gene expression: deseq_normalized_counts.txt Raw read counts table for lncRNA expression: raw_lncrna_counts.txt Annotated Ya genes: yagenes_aphidb4v2_psl_best_score_sorted.gff Annotated long non-coding RNAs: lncrna_aphidb4v2_psl_best_score_sorted.gtf