five

IS5 Element Characterization Across Pseudomonas syringae Strains

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DataCite Commons2024-10-03 更新2024-11-06 收录
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https://figshare.com/articles/dataset/IS5_Element_Characterization_Across_Pseudomonas_syringae_Strains/27098338/3
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Supplemental information for our manuscript concerning IS element distributions and IS5 element characterization across Pseudomonas syringae. This folder contains 3 files:<br>1) an excel spreadsheet documenting IS5 locations in three complete P. syringae pv. lachrymans genomes. One sheet lists all of the IS5 elements that match by BlastP and the other sheet contains a rosetta stone whereby synteny of all IS5 elements across these three genomes was compared by hand2) a genbank flat file (.gff) for the assembly of strain DBL328. This is a kanamycin resistant isolate of <i>P. syringae </i>pv. lachrymans 107 (MAFF301305) in which an IS5 element hopped in front of the <i>npt</i> gene thereby enabling expression and kanamycin resistance in this strain3) a .tsv file of the results of ISfinder characterization across all P. syringae complete genomes vetted as part of this manuscript<br>4) a spreadsheet containing all <i>insH </i>DiamondBlastP hits from Pseudomonas.com as well as a summary worksheet of all complete genomes and numbers of IS5 elements5) a .csv file of all complete genomes used in the manuscript as well as Genbank accession numbers
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figshare
创建时间:
2024-09-27
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