Summary of analyses using five and ten SNP cutoffs.

Summary of analyses using five and ten SNP cutoffs. Mean tree height refers to the height of timed phylogenetic trees in years. TP + GLM refers to a statistical pipeline where infection source labels are first generated using TransPhylo and then used as response variables in a generalized linear model to calculate an odds ratio. The odds ratio is the odds ratio for the probability of being an infection source given the case is living without HIV as compared to cases living with HIV.