Highly expressed putative phage cargo genes.

aPutative cargo gene number used in Figure 4.bProphage-encoded genes that have RPKM values >2x the average for that phage (average RPKM values for each prophage are: CRP28 = 18, CRP99 = 11, CRPr20 = 78, ΦNP = 101, CRP38 = 38, CRP49 = 21). Genes predicted to be involved in the phage lytic or lysogenic cycle were excluded from this list.cThe prophage remnant CRPr20 is included in this list due to its high similarity to CRP38 and the difficulty in mapping repetitive sequences. The effector cargo genes encoded on CRPr13, CRPr17 and CRPr33 were described previously [20].