Main characteristics of the <i>B. anynana</i> BACs analyzed.

General characteristics observed for each BAC clone, including a summary of the annotation parameters discussed in the text. 1BAC ID including NCBI accession number, BAC clone name from library at CUGI [27], and BAC sequence name from assembly by JGI. The CUGI and JGI names are used in the custom database [47]; 2Genes used to select the BACs for sequencing (see Introduction for abbreviations); 3B. anynana linkage group based on mapping of the target genes (LG; [26]); 4% repetitive sequence corresponding to single repeats (S) and low complexity (LC) regions as identified by RepeatMasker [41]; 5type of TEs, according to CENSOR [74] classification; 6predicted peptides by Kaikogaas: number and (average aminoacid length); 7predicted peptides after manual validation: number and (average aminoacid length); 8Number of B. anynana UniGenes matching each BAC, and number corresponding to the validated predicted genes in Figure 1, cf. [47]; 9Percent sequence annotated as corresponding to protein-coding, intronic and intergenic DNA. Details in [47] and the supplementary files.