nmf

Inputs and results of non-negative matrix factorization (NMF) analyses for various subsets of cells. We make use of NMF results throughout the analyses (see analysis files in archives Hydra_Seurat_NMF_regulators_analyses and Hydra_URD_analysis). These analyses expect directory nmf/ to be placed in the same location as the analysis markdowns (Rmd files). A sample NMF analysis (enK40) is presented in document SA07_NMF.Rmd available in archive Hydra_Seurat_NMF_regulators_analyses.