A nanopore based chromosome-level assembly representing Atlantic cod from the Celtic Sea.

File S1: wtdbg2 parameters used to generate the two initial genome assemblies.<br>File S2: Linkage map of gadMor_Celtic: SNPs, position in gadMor_Celtic, genetic linkage of male, female in centimorgan (cM) and SNP flank sequence from gadMor1 (NEAC). <br>File S3: Predicted function of open reading frames were found with TransDecoder and homology search using blastp against zebrafish and stickleback protein databases. <br>File S4: Plots showing collinearity between genetic maps for males (red) and female (blue) and the frequency of a 258bp tandem repeat structure (histogram) predicted to be related to centromeres in all 23 chromosomes. <br>File S5: This contains the list of genes and positions in LGs 1, 2, 7 and 12. <br>File S6: The putative 258bp centromere repeat sequence.<br><br>gadMor_celtic_repeat_Library.fa.txt - Repeat library<br><br>gadMor_Celtic.fa.txt -Genome assembly<br>