Additional file 2 of MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction

Additional file 2. Strain list 1: ST131 data used for validation (including accessions for complete genomes, raw ONT data and Illumina read data). Strain list 2: Accession and metadata for the eight publicly available ONT assemblies used in subsequent validation. Execution parameters: Specific commands used for each tool in this study. Guppy 3.4.3 vs. Guppy 3.6.1 remaining variants: List of variant positions and genetic context for Guppy v3.4.3 and v3.6.1 based on comparison to the EC958 reference genome standard. MicroPIPE metrics: Pipeline run times and memory metrics for 12 ST131 strains.