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收藏DataONE2016-01-19 更新2024-06-27 收录
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资源简介：
code for simulation of gene tree within species tree with sampling.
requirements:
R packages "ape", "apTreeshape"
SIMCOAL (SIMCOAL must be in your working directory)
codes:
simulation.R: an example code for simulations used in the manuscripts
gene.tree.simulations.R: functions used to run SIMCOAL simulation, sample species and simulate species trees
simcoal.functions.R: functions for running SIMCOAL from R
sample.lineage.R: functions for sampling species from trees
usage:
"gene.tree.simulations.R", "simcoal.functions.R" and "sample.lineage.R" include functions used to run simulations. "simulation.R" is a code to call these functions and run a simulation.
put the four R script files and SIMCOAL in a directory. Then set your working directory to it (setwd("...")).
run codes in simulation.R by source("./simulation.R") or copy and paste the codes.
创建时间：
2016-01-19
