Homozygous deletions observed in a single sample.

Deletions are mapped on the Human Feb. 2009 (GRCh37/hg19) assembly of the human genome, except for the deletions flanked by non-SNP markers, which are mapped to the Human March 2006 (NCBI36/hg18) assembly. Flanking SNPs refers to the SNP markers flanking the homozygously deleted SNPs, and represent the largest possible size of the deletion. The genes located within and directly upstream and downstream from the hypothesized deleted regions are indicated. The genes that contain exons which may fall in the region of deletion are bolded. Genes found to be differentially expressed in Bonome et al., 2005 are indicated by an asterisk (*). High grade amplifications and homozygous deletions refer to regions identified by the Sanger Cancer Genome Project.